A modern container for storing coordinates of spatially-resolved single
cells. Capable of storing multiple cell segmentation boundary masks.
Supports coordinates for spatially-resolved molecule (FISH) data.
Compatible with SpatialImage
moleculesA named list of
Molecules objects defining
spatially-resolved molecular coordinates
boundariesA named list of
Segmentation and
Centroids objects defining
spatially-resolved boundaries
assayA character naming the associated assay of the spatial coordinates
keyA one-length character vector with the object's key; keys must
be one or more alphanumeric characters followed by an underscore
“_” (regex pattern
“^[a-zA-Z][a-zA-Z0-9]*_$
”)