Create an AzimuthData object — CreateAzimuthData • Azimuth

Create an auxiliary AzimuthData object for storing necessary info when generating an Azimuth reference.

CreateAzimuthData(
  object,
  plotref = "umap",
  plot.metadata = NULL,
  colormap = NULL,
  reference.version = "0.0.0"
)

Arguments

object: Seurat object
plotref: Either the name of the DimReduc in the provided Seurat object to use for the plotting reference or the DimReduc object itself.
plot.metadata: A data.frame of discrete metadata fields for the cells in the plotref.
colormap: A list of named and ordered vectors specifying the colors and levels for the metadata. See CreateColorMap for help generating your own.
reference.version: Version of the Azimuth reference

Returns an AzimuthData object