Function reference • Azimuth

All functions
`Azimuth` `Azimuth-package`	Azimuth: A Shiny App Demonstrating a Query-Reference Mapping Algorithm for Single-Cell Data
`AzimuthApp()`	Launch the mapping app
`AzimuthBridgeReference()`	Create a Seurat object compatible with Azimuth.
`AzimuthData-class` `AzimuthData`	AzimuthData
`AzimuthReference()`	Create a Seurat object compatible with Azimuth.
`ConvertGeneNames()`	Converts gene names of query to match type/species of reference names (human or mouse).
`CreateAzimuthData()`	Create an `AzimuthData` object
`CreateColorMap()`	Create A Color Map
`GetColorMap()`	Get Azimuth color mapping
`GetPlotRef()`	Get Azimuth plotref
`GetTranscripts()`	Get transcripts modified from Signac::GeneActivity
`LoadBridgeReference()`	Load the extended reference RDS file for bridge integration
`LoadFileInput()`	Load file input into a `Seurat` object
`LoadH5ADobs()`	Load obs from a H5AD file
`LoadReference()`	Load the reference RDS files
`ReferenceVersion()`	Get Azimuth reference version number
`RunAzimuth()`	Run Azimuth annotation
`RunAzimuthATAC()`	Run Azimuth annotation for ATAC query
`SaveAzimuthReference()`	Save `Azimuth` references and neighbors index to same folder
`SetColorMap()`	Set Azimuth color mapping
`ValidateAzimuthReference()`	Validate References for Azimuth

Reference