Methods for Molecules objects
# S3 method for Molecules
Features(x, ...)
# S3 method for Molecules
GetTissueCoordinates(object, features = NULL, ...)
# S3 method for Molecules
subset(x, features = NULL, ...)
# S4 method for Molecules
show(object)A Molecules object
Arguments passed to other methods
A vector of molecule names to keep; if NULL, defaults
to all molecules
Features: A vector of spatially-resolved molecule names;
if no molecular information present, returns NULL
GetTissueCoordinates: A data frame with three columns:
“x”: the x-coordinate of a molecule
“y”: the y-coordinate of a molecule
“molecule”: the molecule name
subset: x subsetted to the features specified
by features
show: Invisibly returns NULL
Features: Get spatially-resolved molecule names
GetTissueCoordinates: Get spatially-resolved
molecule coordinates
subset: Subset a Molecules object to certain molecules
show: Display an object summary to stdout
Segmentation layer classes:
Centroids-class,
Centroids-methods,
Molecules-class,
Segmentation-class,
Segmentation-methods