Build a landmark object with correlation analysis and UMAP embedding

Build a landmark object with correlation analysis and UMAP embedding

BuildLandmarkObject(
  object = NULL,
  sample.obj = NULL,
  rename.sample = NULL,
  weighted.nn.name = "weighted.nn",
  landmark.assay.name = "LANDMARK",
  features.to.test = NULL,
  k.nn = 20,
  min.dist = 0.3,
  ...
)

Arguments

object

Seurat object

sample.obj

Sample-level Seurat object

rename.sample

Optional renaming for samples

weighted.nn.name

Name of weighted nearest neighbor object

landmark.assay.name

Name of landmark assay

features.to.test

Features to test for correlation

k.nn

Number of nearest neighbors. Default is 20.

min.dist

Minimum distance for UMAP. Default is 0.3.

...

Additional arguments

Value

Landmark object with UMAP and correlation data