Package index • scSLIDE

All functions

BuildLandmarkObject(): Build a landmark object with correlation analysis and UMAP embedding

FindmmNN(): Find Multi-Modal Nearest Neighbors

GenerateSampleObject(): Generate a sample-level count matrix based on landmark assay and its weighted.nn object

NormalizeChiSquared(): Apply Chi-squared normalization to a Seurat object

PlotLandmarkObject(): Visualize landmark-trajectory correlations with UMAP plots

PrepareSampleObject(): Perform preprocessing procedures for a Seurat object to prepare for the sample-level analysis

QuickCorTest(): Perform cor.test between each gene and a response variable given a Seurat object

RunAndProjectUMAP(): Generate a UMAP for a sketched assay and then project it to the full data.

RunDiffusionMap(): Run Diffusion Map

RunPLS(): Run Partial Least Squares (PLS) on Seurat Objects

SampleLevelDimPlot(): Visualize the landmark-trajectory relevance and the sample-level cell density

SketchDataByGroup(): Sketch Data by Group

TrajDETest(): Trajectory Differential Expression Test

cellanova_calc_BE(): Perform CellAnova Batch correction